Scott Nemeth
2018-09-21 19:16:23 UTC
I'm hoping someone could help me understand what's going on when I try to
install a meta-package. The goal here is to be able to install the
meta-package with all dependencies behind a fire-walled network that has no
external internet (only internal).
We have a number of in-house built packages, but the majority of the
packages come from the Anaconda defaults (and one copied from conda-forge,
mesalib). Some of the in-house built packages are using the CDT packages,
OpenGL, and X11. I've verified the environment works correctly using the
custom packages, so I'm beyond all the typical build/run issues that come
with using the graphics environment (i.e. it works). I've copied all the
needed Anaconda default packages into our local server, and re-indexed the
location. Conda and Conda-build are up to date too.
When I try to create a new environment with the meta-package installed and
the defaults channel deactivated, I get the following:
$ conda create --name=test-dds-run dds-run
Solving environment: failed
UnsatisfiableError: The following specifications were found to be in
conflict:
- dds-run
Use "conda info <package>" to see the dependencies for each package.
Then, I re-enable the defaults channel in .condarc and re-run the command:
conda create --name=test-dds-run dds-run
Solving environment: done
## Package Plan ##
environment location: /fds/miniconda3/envs/test-dds-run
added / updated specs:
- dds-run
The following packages will be downloaded:
package | build
---------------------------|-----------------
swig-3.0.12 | h38cdd7d_3 1.3 MB defaults
ipython_genutils-0.2.0 | py27h89fb69b_0 38 KB
http://localServer:8000/anaconda-packages
libpq-10.5 | h1ad7b7a_0 2.7 MB
http://localServer:8000/anaconda-packages
python-graph-core-1.8.2 | py27_0 91 KB
http://localServer:8000/custom-packages
decorator-4.3.0 | py27_0 15 KB
http://localServer:8000/anaconda-packages
pip-10.0.1 | py27_0 1.7 MB
http://localServer:8000/anaconda-packages
libffi-3.2.1 | hd88cf55_4 43 KB defaults
gettext-0.19.8.1 | hd7bead4_3 3.7 MB defaults
boost-1.65.1 | py27_4 4 KB
http://localServer:8000/anaconda-packages
freetype-2.9.1 | h8a8886c_1 822 KB
http://localServer:8000/anaconda-packages
libssh2-1.8.0 | h9cfc8f7_4 243 KB
http://localServer:8000/anaconda-packages
freeimage-3.17.0 | 1 5.4 MB
http://localServer:8000/anaconda-packages
gdk-pixbuf-2.36.12 | h14c3975_0 675 KB
http://localServer:8000/custom-packages
freexl-1.0.5 | h14c3975_0 44 KB
http://localServer:8000/anaconda-packages
gobject-introspection-1.56.1| py27hbc4ca2d_2 1.3 MB
http://localServer:8000/anaconda-packages
graphite2-1.3.12 | h23475e2_2 106 KB
http://localServer:8000/anaconda-packages
ptyprocess-0.6.0 | py27_0 22 KB
http://localServer:8000/anaconda-packages
backports-1.0 | py27_1 3 KB
http://localServer:8000/anaconda-packages
liblbfgs-1.10.0 | h14c3975_0 38 KB
http://localServer:8000/custom-packages
libcurl-7.61.0 | h1ad7b7a_0 494 KB
http://localServer:8000/anaconda-packages
curl-7.61.0 | h84994c4_0 141 KB
http://localServer:8000/anaconda-packages
numexpr-2.6.8 | py27h2ffa06c_0 189 KB
http://localServer:8000/anaconda-packages
libiconv-1.15 | h63c8f33_5 2.0 MB
http://localServer:8000/anaconda-packages
xerces-c-3.2.1 | hac72e42_0 3.2 MB
http://localServer:8000/anaconda-packages
gdal-2.3.0 | py27h04863e7_1 1.1 MB
http://localServer:8000/anaconda-packages
glib-2.56.2 | hd408876_0 5.0 MB
http://localServer:8000/anaconda-packages
libgcc-ng-8.2.0 | hdf63c60_1 7.6 MB
http://localServer:8000/anaconda-packages
backports.shutil_get_terminal_size-1.0.0| py27_2 8
KB http://localServer:8000/anaconda-packages
atk-2.22.0 | h14c3975_0 440 KB
http://localServer:8000/custom-packages
pcre-8.42 | h439df22_0 251 KB
http://localServer:8000/anaconda-packages
six-1.11.0 | py27_1 21 KB
http://localServer:8000/anaconda-packages
libopenblas-0.3.3 | h5a2b251_2 7.6 MB
http://localServer:8000/anaconda-packages
libxcb-1.13 | h1bed415_1 502 KB
http://localServer:8000/anaconda-packages
blas-1.0 | openblas 48 KB
http://localServer:8000/anaconda-packages
quantities-0.12.2 | py27_0 124 KB
http://localServer:8000/custom-packages
pathlib2-2.3.2 | py27_0 31 KB
http://localServer:8000/anaconda-packages
geos-3.6.2 | heeff764_2 1.6 MB defaults
wcwidth-0.1.7 | py27h9e3e1ab_0 25 KB
http://localServer:8000/anaconda-packages
openjpeg-2.3.0 | h05c96fa_1 456 KB
http://localServer:8000/anaconda-packages
libglu-9.0.0 | hf484d3e_1 377 KB
http://localServer:8000/anaconda-packages
json-c-0.13.1 | h1bed415_0 70 KB
http://localServer:8000/anaconda-packages
libglade-2.6.4 | 0 108 KB
http://localServer:8000/custom-packages
hdf4-4.2.13 | h3ca952b_2 916 KB defaults
assimp-3.2.0 | py27h6bb024c_0 2.4 MB
http://localServer:8000/custom-packages
pygments-2.2.0 | py27h4a8b6f5_0 1.3 MB
http://localServer:8000/anaconda-packages
pango-1.42.4 | h049681c_0 528 KB
http://localServer:8000/anaconda-packages
mesalib-17.3.9 | hdd5ec5b_0 9.7 MB
http://localServer:8000/custom-packages
proj4-5.0.1 | h14c3975_0 7.0 MB
http://localServer:8000/anaconda-packages
blosc-1.14.4 | hdbcaa40_0 601 KB
http://localServer:8000/anaconda-packages
tk-8.6.8 | hbc83047_0 3.1 MB
http://localServer:8000/anaconda-packages
libstdcxx-ng-8.2.0 | hdf63c60_1 2.9 MB
http://localServer:8000/anaconda-packages
ois-1.3.0 | h6bb024c_5 139 KB
http://localServer:8000/custom-packages
certifi-2018.8.24 | py27_1 139 KB
http://localServer:8000/anaconda-packages
simplegeneric-0.8.1 | py27_2 9 KB
http://localServer:8000/anaconda-packages
gtk2-2.24.31 | h6bb024c_1 9.7 MB
http://localServer:8000/custom-packages
libboost-1.65.1 | habcd387_4 19.2 MB
http://localServer:8000/anaconda-packages
expat-2.2.6 | he6710b0_0 187 KB
http://localServer:8000/anaconda-packages
fontconfig-2.13.0 | h9420a91_0 291 KB
http://localServer:8000/anaconda-packages
nomkl-3.0 | 0 48 KB
http://localServer:8000/anaconda-packages
traitlets-4.3.2 | py27hd6ce930_0 126 KB
http://localServer:8000/anaconda-packages
numpy-base-1.15.1 | py27h2f8d375_0 4.1 MB
http://localServer:8000/anaconda-packages
libuuid-1.0.3 | h1bed415_2 16 KB
http://localServer:8000/anaconda-packages
wheel-0.31.1 | py27_0 62 KB
http://localServer:8000/anaconda-packages
numpy-1.15.1 | py27h99e49ec_0 37 KB
http://localServer:8000/anaconda-packages
ogre-1.9.0 | h153bfac_7 217.0 MB
http://localServer:8000/custom-packages
libpng-1.6.34 | hb9fc6fc_0 334 KB
http://localServer:8000/anaconda-packages
atlas-3.8.4 | 0 3.1 MB
http://localServer:8000/anaconda-packages
snappy-1.1.7 | hbae5bb6_3 38 KB defaults
zlib-1.2.11 | ha838bed_2 101 KB defaults
setuptools-40.2.0 | py27_0 585 KB
http://localServer:8000/anaconda-packages
pygobject-2.28.7 | h6bb024c_2 511 KB
http://localServer:8000/custom-packages
scandir-1.9.0 | py27h14c3975_0 28 KB
http://localServer:8000/anaconda-packages
hdf5-1.8.18 | h6792536_1 4.2 MB defaults
readline-7.0 | h7b6447c_5 392 KB
http://localServer:8000/anaconda-packages
pygtk-2.24.0 | ha8d69ae_2 2.1 MB
http://localServer:8000/custom-packages
py-boost-1.65.1 | py27hf484d3e_4 301 KB
http://localServer:8000/anaconda-packages
giflib-5.1.4 | h14c3975_1 78 KB
http://localServer:8000/anaconda-packages
prompt_toolkit-1.0.15 | py27_0 331 KB
http://localServer:8000/anaconda-packages
path.py-11.1.0 | py27_0 52 KB
http://localServer:8000/anaconda-packages
cspice-0.0.66 | h14c3975_3 937.7 MB
http://localServer:8000/custom-packages
kealib-1.4.7 | h5472223_5 171 KB defaults
bzip2-1.0.6 | h14c3975_5 414 KB
http://localServer:8000/anaconda-packages
poppler-0.65.0 | h581218d_1 1.6 MB
http://localServer:8000/anaconda-packages
pycairo-1.17.1 | py27h2a1e443_0 73 KB
http://localServer:8000/anaconda-packages
fribidi-1.0.5 | h7b6447c_0 112 KB
http://localServer:8000/anaconda-packages
krb5-1.16.1 | hc83ff2d_6 1.4 MB
http://localServer:8000/anaconda-packages
libgdal-2.3.0 | heea9cce_1 17.5 MB
http://localServer:8000/anaconda-packages
pickleshare-0.7.4 | py27_0 8 KB
http://localServer:8000/anaconda-packages
libspatialite-4.3.0a | he475c7f_19 3.1 MB
http://localServer:8000/anaconda-packages
pexpect-4.6.0 | py27_0 74 KB
http://localServer:8000/anaconda-packages
enum34-1.1.6 | py27_1 57 KB
http://localServer:8000/anaconda-packages
ipython-5.8.0 | py27_0 1.0 MB
http://localServer:8000/anaconda-packages
configobj-5.0.6 | py27_1 53 KB
http://localServer:8000/anaconda-packages
python-2.7.15 | h1571d57_0 12.1 MB
http://localServer:8000/anaconda-packages
sundials-2.6.0 | h14c3975_1 525 KB
http://localServer:8000/custom-packages
libnetcdf-4.6.1 | h015f1c5_0 1.3 MB
http://localServer:8000/anaconda-packages
dds-run-0.0.0 | 1 17 KB
http://localServer:8000/custom-packages
poppler-data-0.4.9 | 0 3.5 MB
http://localServer:8000/anaconda-packages
pytables-3.4.4 | py27he1c29e1_0 1.5 MB
http://localServer:8000/anaconda-packages
libxml2-2.9.8 | h26e45fe_1 2.0 MB
http://localServer:8000/anaconda-packages
libtiff-4.0.9 | he85c1e1_2 567 KB
http://localServer:8000/anaconda-packages
libdap4-3.19.1 | h6ec2957_0 1.5 MB
http://localServer:8000/anaconda-packages
harfbuzz-1.8.8 | hffaf4a1_0 863 KB
http://localServer:8000/anaconda-packages
libgfortran-ng-7.3.0 | hdf63c60_0 1.3 MB
http://localServer:8000/anaconda-packages
libkml-1.3.0 | h9d32c78_3 633 KB defaults
cairo-1.14.12 | h8948797_3 1.3 MB
http://localServer:8000/anaconda-packages
zziplib-0.13.69 | py27h14c3975_0 144 KB
http://localServer:8000/custom-packages
------------------------------------------------------------
Total: 1.30 GB
The following NEW packages will be INSTALLED:
assimp: 3.2.0-py27h6bb024c_0
http://localServer:8000/custom-packages
atk: 2.22.0-h14c3975_0
http://localServer:8000/custom-packages
atlas: 3.8.4-0
http://localServer:8000/anaconda-packages
backports: 1.0-py27_1
http://localServer:8000/anaconda-packages
backports.shutil_get_terminal_size: 1.0.0-py27_2
http://localServer:8000/anaconda-packages
blas: 1.0-openblas
http://localServer:8000/anaconda-packages
blosc: 1.14.4-hdbcaa40_0
http://localServer:8000/anaconda-packages
boost: 1.65.1-py27_4
http://localServer:8000/anaconda-packages
bzip2: 1.0.6-h14c3975_5
http://localServer:8000/anaconda-packages
ca-certificates: 2018.03.07-0
http://localServer:8000/anaconda-packages
cairo: 1.14.12-h8948797_3
http://localServer:8000/anaconda-packages
certifi: 2018.8.24-py27_1
http://localServer:8000/anaconda-packages
configobj: 5.0.6-py27_1
http://localServer:8000/anaconda-packages
cspice: 0.0.66-h14c3975_3
http://localServer:8000/custom-packages
curl: 7.61.0-h84994c4_0
http://localServer:8000/anaconda-packages
dds-run: 0.0.0-1
http://localServer:8000/custom-packages
decorator: 4.3.0-py27_0
http://localServer:8000/anaconda-packages
enum34: 1.1.6-py27_1
http://localServer:8000/anaconda-packages
expat: 2.2.6-he6710b0_0
http://localServer:8000/anaconda-packages
fontconfig: 2.13.0-h9420a91_0
http://localServer:8000/anaconda-packages
freeimage: 3.17.0-1
http://localServer:8000/anaconda-packages
freetype: 2.9.1-h8a8886c_1
http://localServer:8000/anaconda-packages
freexl: 1.0.5-h14c3975_0
http://localServer:8000/anaconda-packages
fribidi: 1.0.5-h7b6447c_0
http://localServer:8000/anaconda-packages
gdal: 2.3.0-py27h04863e7_1
http://localServer:8000/anaconda-packages
gdk-pixbuf: 2.36.12-h14c3975_0
http://localServer:8000/custom-packages
geos: 3.6.2-heeff764_2 defaults
gettext: 0.19.8.1-hd7bead4_3 defaults
giflib: 5.1.4-h14c3975_1
http://localServer:8000/anaconda-packages
glib: 2.56.2-hd408876_0
http://localServer:8000/anaconda-packages
gobject-introspection: 1.56.1-py27hbc4ca2d_2
http://localServer:8000/anaconda-packages
graphite2: 1.3.12-h23475e2_2
http://localServer:8000/anaconda-packages
gtk2: 2.24.31-h6bb024c_1
http://localServer:8000/custom-packages
harfbuzz: 1.8.8-hffaf4a1_0
http://localServer:8000/anaconda-packages
hdf4: 4.2.13-h3ca952b_2 defaults
hdf5: 1.8.18-h6792536_1 defaults
icu: 58.2-h9c2bf20_1 defaults
ipython: 5.8.0-py27_0
http://localServer:8000/anaconda-packages
ipython_genutils: 0.2.0-py27h89fb69b_0
http://localServer:8000/anaconda-packages
jpeg: 9b-h024ee3a_2 defaults
json-c: 0.13.1-h1bed415_0
http://localServer:8000/anaconda-packages
kealib: 1.4.7-h5472223_5 defaults
krb5: 1.16.1-hc83ff2d_6
http://localServer:8000/anaconda-packages
libboost: 1.65.1-habcd387_4
http://localServer:8000/anaconda-packages
libcurl: 7.61.0-h1ad7b7a_0
http://localServer:8000/anaconda-packages
libdap4: 3.19.1-h6ec2957_0
http://localServer:8000/anaconda-packages
libedit: 3.1.20170329-h6b74fdf_2
http://localServer:8000/anaconda-packages
libffi: 3.2.1-hd88cf55_4 defaults
libgcc-ng: 8.2.0-hdf63c60_1
http://localServer:8000/anaconda-packages
libgdal: 2.3.0-heea9cce_1
http://localServer:8000/anaconda-packages
libgfortran-ng: 7.3.0-hdf63c60_0
http://localServer:8000/anaconda-packages
libglade: 2.6.4-0
http://localServer:8000/custom-packages
libglu: 9.0.0-hf484d3e_1
http://localServer:8000/anaconda-packages
libiconv: 1.15-h63c8f33_5
http://localServer:8000/anaconda-packages
libkml: 1.3.0-h9d32c78_3 defaults
liblbfgs: 1.10.0-h14c3975_0
http://localServer:8000/custom-packages
libnetcdf: 4.6.1-h015f1c5_0
http://localServer:8000/anaconda-packages
libopenblas: 0.3.3-h5a2b251_2
http://localServer:8000/anaconda-packages
libpng: 1.6.34-hb9fc6fc_0
http://localServer:8000/anaconda-packages
libpq: 10.5-h1ad7b7a_0
http://localServer:8000/anaconda-packages
libspatialite: 4.3.0a-he475c7f_19
http://localServer:8000/anaconda-packages
libssh2: 1.8.0-h9cfc8f7_4
http://localServer:8000/anaconda-packages
libstdcxx-ng: 8.2.0-hdf63c60_1
http://localServer:8000/anaconda-packages
libtiff: 4.0.9-he85c1e1_2
http://localServer:8000/anaconda-packages
libuuid: 1.0.3-h1bed415_2
http://localServer:8000/anaconda-packages
libxcb: 1.13-h1bed415_1
http://localServer:8000/anaconda-packages
libxml2: 2.9.8-h26e45fe_1
http://localServer:8000/anaconda-packages
lzo: 2.10-h49e0be7_2 defaults
mesalib: 17.3.9-hdd5ec5b_0
http://localServer:8000/custom-packages
ncurses: 6.1-hf484d3e_0
http://localServer:8000/anaconda-packages
nomkl: 3.0-0
http://localServer:8000/anaconda-packages
numexpr: 2.6.8-py27h2ffa06c_0
http://localServer:8000/anaconda-packages
numpy: 1.15.1-py27h99e49ec_0
http://localServer:8000/anaconda-packages
numpy-base: 1.15.1-py27h2f8d375_0
http://localServer:8000/anaconda-packages
ogre: 1.9.0-h153bfac_7
http://localServer:8000/custom-packages
ois: 1.3.0-h6bb024c_5
http://localServer:8000/custom-packages
openjpeg: 2.3.0-h05c96fa_1
http://localServer:8000/anaconda-packages
openssl: 1.0.2p-h14c3975_0
http://localServer:8000/anaconda-packages
pango: 1.42.4-h049681c_0
http://localServer:8000/anaconda-packages
path.py: 11.1.0-py27_0
http://localServer:8000/anaconda-packages
pathlib2: 2.3.2-py27_0
http://localServer:8000/anaconda-packages
pcre: 8.42-h439df22_0
http://localServer:8000/anaconda-packages
pexpect: 4.6.0-py27_0
http://localServer:8000/anaconda-packages
pickleshare: 0.7.4-py27_0
http://localServer:8000/anaconda-packages
pip: 10.0.1-py27_0
http://localServer:8000/anaconda-packages
pixman: 0.34.0-hceecf20_3 defaults
poppler: 0.65.0-h581218d_1
http://localServer:8000/anaconda-packages
poppler-data: 0.4.9-0
http://localServer:8000/anaconda-packages
proj4: 5.0.1-h14c3975_0
http://localServer:8000/anaconda-packages
prompt_toolkit: 1.0.15-py27_0
http://localServer:8000/anaconda-packages
ptyprocess: 0.6.0-py27_0
http://localServer:8000/anaconda-packages
py-boost: 1.65.1-py27hf484d3e_4
http://localServer:8000/anaconda-packages
pycairo: 1.17.1-py27h2a1e443_0
http://localServer:8000/anaconda-packages
pygments: 2.2.0-py27h4a8b6f5_0
http://localServer:8000/anaconda-packages
pygobject: 2.28.7-h6bb024c_2
http://localServer:8000/custom-packages
pygtk: 2.24.0-ha8d69ae_2
http://localServer:8000/custom-packages
pytables: 3.4.4-py27he1c29e1_0
http://localServer:8000/anaconda-packages
python: 2.7.15-h1571d57_0
http://localServer:8000/anaconda-packages
python-graph-core: 1.8.2-py27_0
http://localServer:8000/custom-packages
quantities: 0.12.2-py27_0
http://localServer:8000/custom-packages
readline: 7.0-h7b6447c_5
http://localServer:8000/anaconda-packages
scandir: 1.9.0-py27h14c3975_0
http://localServer:8000/anaconda-packages
setuptools: 40.2.0-py27_0
http://localServer:8000/anaconda-packages
simplegeneric: 0.8.1-py27_2
http://localServer:8000/anaconda-packages
six: 1.11.0-py27_1
http://localServer:8000/anaconda-packages
snappy: 1.1.7-hbae5bb6_3 defaults
sqlite: 3.24.0-h84994c4_0
http://localServer:8000/anaconda-packages
sundials: 2.6.0-h14c3975_1
http://localServer:8000/custom-packages
swig: 3.0.12-h38cdd7d_3 defaults
tk: 8.6.8-hbc83047_0
http://localServer:8000/anaconda-packages
traitlets: 4.3.2-py27hd6ce930_0
http://localServer:8000/anaconda-packages
wcwidth: 0.1.7-py27h9e3e1ab_0
http://localServer:8000/anaconda-packages
wheel: 0.31.1-py27_0
http://localServer:8000/anaconda-packages
xerces-c: 3.2.1-hac72e42_0
http://localServer:8000/anaconda-packages
xz: 5.2.4-h14c3975_4
http://localServer:8000/anaconda-packages
zlib: 1.2.11-ha838bed_2 defaults
zziplib: 0.13.69-py27h14c3975_0
http://localServer:8000/custom-packages
Proceed ([y]/n)?
So it appears the dependencies do solve out correctly (and the env works),
but notice a number of packages are retrieved from the defaults channel.
I've double checked to make sure I have exactly the same packages in our
local server, for example:
$ conda search zlib=1.2.11=ha838bed_2
Loading channels: done
# Name Version Build Channel
zlib 1.2.11 ha838bed_2 pkgs/main
zlib 1.2.11 ha838bed_2 anaconda-packages
And I have the .condarc set up as follows:
channel_priority: true
channels:
- http://localServer:8000/anaconda-packages
- http://localServer:8000/custom-packages
- defaults
So I'm thinking here conda should be seeing and installing my local
packages, and not the packages from defaults. The list of packages coming
from defaults are:
geos: 3.6.2-heeff764_2 defaults
gettext: 0.19.8.1-hd7bead4_3 defaults
hdf4: 4.2.13-h3ca952b_2 defaults
hdf5: 1.8.18-h6792536_1 defaults
icu: 58.2-h9c2bf20_1 defaults
jpeg: 9b-h024ee3a_2 defaults
kealib: 1.4.7-h5472223_5 defaults
libffi: 3.2.1-hd88cf55_4 defaults
libkml: 1.3.0-h9d32c78_3 defaults
lzo: 2.10-h49e0be7_2 defaults
pixman: 0.34.0-hceecf20_3 defaults
snappy: 1.1.7-hbae5bb6_3 defaults
swig: 3.0.12-h38cdd7d_3 defaults
zlib: 1.2.11-ha838bed_2 defaults
Here's the info on the installed conda:
$ conda info
active environment : None
shell level : 0
user config file : /fds/homes/me/.condarc
populated config files : /fds/miniconda3/.condarc
conda version : 4.5.11
conda-build version : 3.15.1
python version : 3.6.6.final.0
base environment : /fds/miniconda3 (writable)
channel URLs : http://localServer:8000/anaconda-packages/linux-64
http://localServer:8000/anaconda-packages/noarch
http://localServer:8000/custom-packages/linux-64
http://localServer:8000/custom-packages/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/linux-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/pro/linux-64
https://repo.anaconda.com/pkgs/pro/noarch
package cache : /fds/miniconda3/pkgs
/fds/homes/me/.conda/pkgs
envs directories : /fds/miniconda3/envs
/fds/homes/me/.conda/envs
platform : linux-64
user-agent : conda/4.5.11 requests/2.19.1 CPython/3.6.6
Linux/4.10.0-38-generic linuxmint/18.3 glibc/2.23
UID:GID : 1011:1004
netrc file : None
Unfortunately, I can't install the software on a fire-walled machine until
I can create the environment using the local server. Any help resolving
this issue would be most appreciated.
Thanks in advance,
Scott
install a meta-package. The goal here is to be able to install the
meta-package with all dependencies behind a fire-walled network that has no
external internet (only internal).
We have a number of in-house built packages, but the majority of the
packages come from the Anaconda defaults (and one copied from conda-forge,
mesalib). Some of the in-house built packages are using the CDT packages,
OpenGL, and X11. I've verified the environment works correctly using the
custom packages, so I'm beyond all the typical build/run issues that come
with using the graphics environment (i.e. it works). I've copied all the
needed Anaconda default packages into our local server, and re-indexed the
location. Conda and Conda-build are up to date too.
When I try to create a new environment with the meta-package installed and
the defaults channel deactivated, I get the following:
$ conda create --name=test-dds-run dds-run
Solving environment: failed
UnsatisfiableError: The following specifications were found to be in
conflict:
- dds-run
Use "conda info <package>" to see the dependencies for each package.
Then, I re-enable the defaults channel in .condarc and re-run the command:
conda create --name=test-dds-run dds-run
Solving environment: done
## Package Plan ##
environment location: /fds/miniconda3/envs/test-dds-run
added / updated specs:
- dds-run
The following packages will be downloaded:
package | build
---------------------------|-----------------
swig-3.0.12 | h38cdd7d_3 1.3 MB defaults
ipython_genutils-0.2.0 | py27h89fb69b_0 38 KB
http://localServer:8000/anaconda-packages
libpq-10.5 | h1ad7b7a_0 2.7 MB
http://localServer:8000/anaconda-packages
python-graph-core-1.8.2 | py27_0 91 KB
http://localServer:8000/custom-packages
decorator-4.3.0 | py27_0 15 KB
http://localServer:8000/anaconda-packages
pip-10.0.1 | py27_0 1.7 MB
http://localServer:8000/anaconda-packages
libffi-3.2.1 | hd88cf55_4 43 KB defaults
gettext-0.19.8.1 | hd7bead4_3 3.7 MB defaults
boost-1.65.1 | py27_4 4 KB
http://localServer:8000/anaconda-packages
freetype-2.9.1 | h8a8886c_1 822 KB
http://localServer:8000/anaconda-packages
libssh2-1.8.0 | h9cfc8f7_4 243 KB
http://localServer:8000/anaconda-packages
freeimage-3.17.0 | 1 5.4 MB
http://localServer:8000/anaconda-packages
gdk-pixbuf-2.36.12 | h14c3975_0 675 KB
http://localServer:8000/custom-packages
freexl-1.0.5 | h14c3975_0 44 KB
http://localServer:8000/anaconda-packages
gobject-introspection-1.56.1| py27hbc4ca2d_2 1.3 MB
http://localServer:8000/anaconda-packages
graphite2-1.3.12 | h23475e2_2 106 KB
http://localServer:8000/anaconda-packages
ptyprocess-0.6.0 | py27_0 22 KB
http://localServer:8000/anaconda-packages
backports-1.0 | py27_1 3 KB
http://localServer:8000/anaconda-packages
liblbfgs-1.10.0 | h14c3975_0 38 KB
http://localServer:8000/custom-packages
libcurl-7.61.0 | h1ad7b7a_0 494 KB
http://localServer:8000/anaconda-packages
curl-7.61.0 | h84994c4_0 141 KB
http://localServer:8000/anaconda-packages
numexpr-2.6.8 | py27h2ffa06c_0 189 KB
http://localServer:8000/anaconda-packages
libiconv-1.15 | h63c8f33_5 2.0 MB
http://localServer:8000/anaconda-packages
xerces-c-3.2.1 | hac72e42_0 3.2 MB
http://localServer:8000/anaconda-packages
gdal-2.3.0 | py27h04863e7_1 1.1 MB
http://localServer:8000/anaconda-packages
glib-2.56.2 | hd408876_0 5.0 MB
http://localServer:8000/anaconda-packages
libgcc-ng-8.2.0 | hdf63c60_1 7.6 MB
http://localServer:8000/anaconda-packages
backports.shutil_get_terminal_size-1.0.0| py27_2 8
KB http://localServer:8000/anaconda-packages
atk-2.22.0 | h14c3975_0 440 KB
http://localServer:8000/custom-packages
pcre-8.42 | h439df22_0 251 KB
http://localServer:8000/anaconda-packages
six-1.11.0 | py27_1 21 KB
http://localServer:8000/anaconda-packages
libopenblas-0.3.3 | h5a2b251_2 7.6 MB
http://localServer:8000/anaconda-packages
libxcb-1.13 | h1bed415_1 502 KB
http://localServer:8000/anaconda-packages
blas-1.0 | openblas 48 KB
http://localServer:8000/anaconda-packages
quantities-0.12.2 | py27_0 124 KB
http://localServer:8000/custom-packages
pathlib2-2.3.2 | py27_0 31 KB
http://localServer:8000/anaconda-packages
geos-3.6.2 | heeff764_2 1.6 MB defaults
wcwidth-0.1.7 | py27h9e3e1ab_0 25 KB
http://localServer:8000/anaconda-packages
openjpeg-2.3.0 | h05c96fa_1 456 KB
http://localServer:8000/anaconda-packages
libglu-9.0.0 | hf484d3e_1 377 KB
http://localServer:8000/anaconda-packages
json-c-0.13.1 | h1bed415_0 70 KB
http://localServer:8000/anaconda-packages
libglade-2.6.4 | 0 108 KB
http://localServer:8000/custom-packages
hdf4-4.2.13 | h3ca952b_2 916 KB defaults
assimp-3.2.0 | py27h6bb024c_0 2.4 MB
http://localServer:8000/custom-packages
pygments-2.2.0 | py27h4a8b6f5_0 1.3 MB
http://localServer:8000/anaconda-packages
pango-1.42.4 | h049681c_0 528 KB
http://localServer:8000/anaconda-packages
mesalib-17.3.9 | hdd5ec5b_0 9.7 MB
http://localServer:8000/custom-packages
proj4-5.0.1 | h14c3975_0 7.0 MB
http://localServer:8000/anaconda-packages
blosc-1.14.4 | hdbcaa40_0 601 KB
http://localServer:8000/anaconda-packages
tk-8.6.8 | hbc83047_0 3.1 MB
http://localServer:8000/anaconda-packages
libstdcxx-ng-8.2.0 | hdf63c60_1 2.9 MB
http://localServer:8000/anaconda-packages
ois-1.3.0 | h6bb024c_5 139 KB
http://localServer:8000/custom-packages
certifi-2018.8.24 | py27_1 139 KB
http://localServer:8000/anaconda-packages
simplegeneric-0.8.1 | py27_2 9 KB
http://localServer:8000/anaconda-packages
gtk2-2.24.31 | h6bb024c_1 9.7 MB
http://localServer:8000/custom-packages
libboost-1.65.1 | habcd387_4 19.2 MB
http://localServer:8000/anaconda-packages
expat-2.2.6 | he6710b0_0 187 KB
http://localServer:8000/anaconda-packages
fontconfig-2.13.0 | h9420a91_0 291 KB
http://localServer:8000/anaconda-packages
nomkl-3.0 | 0 48 KB
http://localServer:8000/anaconda-packages
traitlets-4.3.2 | py27hd6ce930_0 126 KB
http://localServer:8000/anaconda-packages
numpy-base-1.15.1 | py27h2f8d375_0 4.1 MB
http://localServer:8000/anaconda-packages
libuuid-1.0.3 | h1bed415_2 16 KB
http://localServer:8000/anaconda-packages
wheel-0.31.1 | py27_0 62 KB
http://localServer:8000/anaconda-packages
numpy-1.15.1 | py27h99e49ec_0 37 KB
http://localServer:8000/anaconda-packages
ogre-1.9.0 | h153bfac_7 217.0 MB
http://localServer:8000/custom-packages
libpng-1.6.34 | hb9fc6fc_0 334 KB
http://localServer:8000/anaconda-packages
atlas-3.8.4 | 0 3.1 MB
http://localServer:8000/anaconda-packages
snappy-1.1.7 | hbae5bb6_3 38 KB defaults
zlib-1.2.11 | ha838bed_2 101 KB defaults
setuptools-40.2.0 | py27_0 585 KB
http://localServer:8000/anaconda-packages
pygobject-2.28.7 | h6bb024c_2 511 KB
http://localServer:8000/custom-packages
scandir-1.9.0 | py27h14c3975_0 28 KB
http://localServer:8000/anaconda-packages
hdf5-1.8.18 | h6792536_1 4.2 MB defaults
readline-7.0 | h7b6447c_5 392 KB
http://localServer:8000/anaconda-packages
pygtk-2.24.0 | ha8d69ae_2 2.1 MB
http://localServer:8000/custom-packages
py-boost-1.65.1 | py27hf484d3e_4 301 KB
http://localServer:8000/anaconda-packages
giflib-5.1.4 | h14c3975_1 78 KB
http://localServer:8000/anaconda-packages
prompt_toolkit-1.0.15 | py27_0 331 KB
http://localServer:8000/anaconda-packages
path.py-11.1.0 | py27_0 52 KB
http://localServer:8000/anaconda-packages
cspice-0.0.66 | h14c3975_3 937.7 MB
http://localServer:8000/custom-packages
kealib-1.4.7 | h5472223_5 171 KB defaults
bzip2-1.0.6 | h14c3975_5 414 KB
http://localServer:8000/anaconda-packages
poppler-0.65.0 | h581218d_1 1.6 MB
http://localServer:8000/anaconda-packages
pycairo-1.17.1 | py27h2a1e443_0 73 KB
http://localServer:8000/anaconda-packages
fribidi-1.0.5 | h7b6447c_0 112 KB
http://localServer:8000/anaconda-packages
krb5-1.16.1 | hc83ff2d_6 1.4 MB
http://localServer:8000/anaconda-packages
libgdal-2.3.0 | heea9cce_1 17.5 MB
http://localServer:8000/anaconda-packages
pickleshare-0.7.4 | py27_0 8 KB
http://localServer:8000/anaconda-packages
libspatialite-4.3.0a | he475c7f_19 3.1 MB
http://localServer:8000/anaconda-packages
pexpect-4.6.0 | py27_0 74 KB
http://localServer:8000/anaconda-packages
enum34-1.1.6 | py27_1 57 KB
http://localServer:8000/anaconda-packages
ipython-5.8.0 | py27_0 1.0 MB
http://localServer:8000/anaconda-packages
configobj-5.0.6 | py27_1 53 KB
http://localServer:8000/anaconda-packages
python-2.7.15 | h1571d57_0 12.1 MB
http://localServer:8000/anaconda-packages
sundials-2.6.0 | h14c3975_1 525 KB
http://localServer:8000/custom-packages
libnetcdf-4.6.1 | h015f1c5_0 1.3 MB
http://localServer:8000/anaconda-packages
dds-run-0.0.0 | 1 17 KB
http://localServer:8000/custom-packages
poppler-data-0.4.9 | 0 3.5 MB
http://localServer:8000/anaconda-packages
pytables-3.4.4 | py27he1c29e1_0 1.5 MB
http://localServer:8000/anaconda-packages
libxml2-2.9.8 | h26e45fe_1 2.0 MB
http://localServer:8000/anaconda-packages
libtiff-4.0.9 | he85c1e1_2 567 KB
http://localServer:8000/anaconda-packages
libdap4-3.19.1 | h6ec2957_0 1.5 MB
http://localServer:8000/anaconda-packages
harfbuzz-1.8.8 | hffaf4a1_0 863 KB
http://localServer:8000/anaconda-packages
libgfortran-ng-7.3.0 | hdf63c60_0 1.3 MB
http://localServer:8000/anaconda-packages
libkml-1.3.0 | h9d32c78_3 633 KB defaults
cairo-1.14.12 | h8948797_3 1.3 MB
http://localServer:8000/anaconda-packages
zziplib-0.13.69 | py27h14c3975_0 144 KB
http://localServer:8000/custom-packages
------------------------------------------------------------
Total: 1.30 GB
The following NEW packages will be INSTALLED:
assimp: 3.2.0-py27h6bb024c_0
http://localServer:8000/custom-packages
atk: 2.22.0-h14c3975_0
http://localServer:8000/custom-packages
atlas: 3.8.4-0
http://localServer:8000/anaconda-packages
backports: 1.0-py27_1
http://localServer:8000/anaconda-packages
backports.shutil_get_terminal_size: 1.0.0-py27_2
http://localServer:8000/anaconda-packages
blas: 1.0-openblas
http://localServer:8000/anaconda-packages
blosc: 1.14.4-hdbcaa40_0
http://localServer:8000/anaconda-packages
boost: 1.65.1-py27_4
http://localServer:8000/anaconda-packages
bzip2: 1.0.6-h14c3975_5
http://localServer:8000/anaconda-packages
ca-certificates: 2018.03.07-0
http://localServer:8000/anaconda-packages
cairo: 1.14.12-h8948797_3
http://localServer:8000/anaconda-packages
certifi: 2018.8.24-py27_1
http://localServer:8000/anaconda-packages
configobj: 5.0.6-py27_1
http://localServer:8000/anaconda-packages
cspice: 0.0.66-h14c3975_3
http://localServer:8000/custom-packages
curl: 7.61.0-h84994c4_0
http://localServer:8000/anaconda-packages
dds-run: 0.0.0-1
http://localServer:8000/custom-packages
decorator: 4.3.0-py27_0
http://localServer:8000/anaconda-packages
enum34: 1.1.6-py27_1
http://localServer:8000/anaconda-packages
expat: 2.2.6-he6710b0_0
http://localServer:8000/anaconda-packages
fontconfig: 2.13.0-h9420a91_0
http://localServer:8000/anaconda-packages
freeimage: 3.17.0-1
http://localServer:8000/anaconda-packages
freetype: 2.9.1-h8a8886c_1
http://localServer:8000/anaconda-packages
freexl: 1.0.5-h14c3975_0
http://localServer:8000/anaconda-packages
fribidi: 1.0.5-h7b6447c_0
http://localServer:8000/anaconda-packages
gdal: 2.3.0-py27h04863e7_1
http://localServer:8000/anaconda-packages
gdk-pixbuf: 2.36.12-h14c3975_0
http://localServer:8000/custom-packages
geos: 3.6.2-heeff764_2 defaults
gettext: 0.19.8.1-hd7bead4_3 defaults
giflib: 5.1.4-h14c3975_1
http://localServer:8000/anaconda-packages
glib: 2.56.2-hd408876_0
http://localServer:8000/anaconda-packages
gobject-introspection: 1.56.1-py27hbc4ca2d_2
http://localServer:8000/anaconda-packages
graphite2: 1.3.12-h23475e2_2
http://localServer:8000/anaconda-packages
gtk2: 2.24.31-h6bb024c_1
http://localServer:8000/custom-packages
harfbuzz: 1.8.8-hffaf4a1_0
http://localServer:8000/anaconda-packages
hdf4: 4.2.13-h3ca952b_2 defaults
hdf5: 1.8.18-h6792536_1 defaults
icu: 58.2-h9c2bf20_1 defaults
ipython: 5.8.0-py27_0
http://localServer:8000/anaconda-packages
ipython_genutils: 0.2.0-py27h89fb69b_0
http://localServer:8000/anaconda-packages
jpeg: 9b-h024ee3a_2 defaults
json-c: 0.13.1-h1bed415_0
http://localServer:8000/anaconda-packages
kealib: 1.4.7-h5472223_5 defaults
krb5: 1.16.1-hc83ff2d_6
http://localServer:8000/anaconda-packages
libboost: 1.65.1-habcd387_4
http://localServer:8000/anaconda-packages
libcurl: 7.61.0-h1ad7b7a_0
http://localServer:8000/anaconda-packages
libdap4: 3.19.1-h6ec2957_0
http://localServer:8000/anaconda-packages
libedit: 3.1.20170329-h6b74fdf_2
http://localServer:8000/anaconda-packages
libffi: 3.2.1-hd88cf55_4 defaults
libgcc-ng: 8.2.0-hdf63c60_1
http://localServer:8000/anaconda-packages
libgdal: 2.3.0-heea9cce_1
http://localServer:8000/anaconda-packages
libgfortran-ng: 7.3.0-hdf63c60_0
http://localServer:8000/anaconda-packages
libglade: 2.6.4-0
http://localServer:8000/custom-packages
libglu: 9.0.0-hf484d3e_1
http://localServer:8000/anaconda-packages
libiconv: 1.15-h63c8f33_5
http://localServer:8000/anaconda-packages
libkml: 1.3.0-h9d32c78_3 defaults
liblbfgs: 1.10.0-h14c3975_0
http://localServer:8000/custom-packages
libnetcdf: 4.6.1-h015f1c5_0
http://localServer:8000/anaconda-packages
libopenblas: 0.3.3-h5a2b251_2
http://localServer:8000/anaconda-packages
libpng: 1.6.34-hb9fc6fc_0
http://localServer:8000/anaconda-packages
libpq: 10.5-h1ad7b7a_0
http://localServer:8000/anaconda-packages
libspatialite: 4.3.0a-he475c7f_19
http://localServer:8000/anaconda-packages
libssh2: 1.8.0-h9cfc8f7_4
http://localServer:8000/anaconda-packages
libstdcxx-ng: 8.2.0-hdf63c60_1
http://localServer:8000/anaconda-packages
libtiff: 4.0.9-he85c1e1_2
http://localServer:8000/anaconda-packages
libuuid: 1.0.3-h1bed415_2
http://localServer:8000/anaconda-packages
libxcb: 1.13-h1bed415_1
http://localServer:8000/anaconda-packages
libxml2: 2.9.8-h26e45fe_1
http://localServer:8000/anaconda-packages
lzo: 2.10-h49e0be7_2 defaults
mesalib: 17.3.9-hdd5ec5b_0
http://localServer:8000/custom-packages
ncurses: 6.1-hf484d3e_0
http://localServer:8000/anaconda-packages
nomkl: 3.0-0
http://localServer:8000/anaconda-packages
numexpr: 2.6.8-py27h2ffa06c_0
http://localServer:8000/anaconda-packages
numpy: 1.15.1-py27h99e49ec_0
http://localServer:8000/anaconda-packages
numpy-base: 1.15.1-py27h2f8d375_0
http://localServer:8000/anaconda-packages
ogre: 1.9.0-h153bfac_7
http://localServer:8000/custom-packages
ois: 1.3.0-h6bb024c_5
http://localServer:8000/custom-packages
openjpeg: 2.3.0-h05c96fa_1
http://localServer:8000/anaconda-packages
openssl: 1.0.2p-h14c3975_0
http://localServer:8000/anaconda-packages
pango: 1.42.4-h049681c_0
http://localServer:8000/anaconda-packages
path.py: 11.1.0-py27_0
http://localServer:8000/anaconda-packages
pathlib2: 2.3.2-py27_0
http://localServer:8000/anaconda-packages
pcre: 8.42-h439df22_0
http://localServer:8000/anaconda-packages
pexpect: 4.6.0-py27_0
http://localServer:8000/anaconda-packages
pickleshare: 0.7.4-py27_0
http://localServer:8000/anaconda-packages
pip: 10.0.1-py27_0
http://localServer:8000/anaconda-packages
pixman: 0.34.0-hceecf20_3 defaults
poppler: 0.65.0-h581218d_1
http://localServer:8000/anaconda-packages
poppler-data: 0.4.9-0
http://localServer:8000/anaconda-packages
proj4: 5.0.1-h14c3975_0
http://localServer:8000/anaconda-packages
prompt_toolkit: 1.0.15-py27_0
http://localServer:8000/anaconda-packages
ptyprocess: 0.6.0-py27_0
http://localServer:8000/anaconda-packages
py-boost: 1.65.1-py27hf484d3e_4
http://localServer:8000/anaconda-packages
pycairo: 1.17.1-py27h2a1e443_0
http://localServer:8000/anaconda-packages
pygments: 2.2.0-py27h4a8b6f5_0
http://localServer:8000/anaconda-packages
pygobject: 2.28.7-h6bb024c_2
http://localServer:8000/custom-packages
pygtk: 2.24.0-ha8d69ae_2
http://localServer:8000/custom-packages
pytables: 3.4.4-py27he1c29e1_0
http://localServer:8000/anaconda-packages
python: 2.7.15-h1571d57_0
http://localServer:8000/anaconda-packages
python-graph-core: 1.8.2-py27_0
http://localServer:8000/custom-packages
quantities: 0.12.2-py27_0
http://localServer:8000/custom-packages
readline: 7.0-h7b6447c_5
http://localServer:8000/anaconda-packages
scandir: 1.9.0-py27h14c3975_0
http://localServer:8000/anaconda-packages
setuptools: 40.2.0-py27_0
http://localServer:8000/anaconda-packages
simplegeneric: 0.8.1-py27_2
http://localServer:8000/anaconda-packages
six: 1.11.0-py27_1
http://localServer:8000/anaconda-packages
snappy: 1.1.7-hbae5bb6_3 defaults
sqlite: 3.24.0-h84994c4_0
http://localServer:8000/anaconda-packages
sundials: 2.6.0-h14c3975_1
http://localServer:8000/custom-packages
swig: 3.0.12-h38cdd7d_3 defaults
tk: 8.6.8-hbc83047_0
http://localServer:8000/anaconda-packages
traitlets: 4.3.2-py27hd6ce930_0
http://localServer:8000/anaconda-packages
wcwidth: 0.1.7-py27h9e3e1ab_0
http://localServer:8000/anaconda-packages
wheel: 0.31.1-py27_0
http://localServer:8000/anaconda-packages
xerces-c: 3.2.1-hac72e42_0
http://localServer:8000/anaconda-packages
xz: 5.2.4-h14c3975_4
http://localServer:8000/anaconda-packages
zlib: 1.2.11-ha838bed_2 defaults
zziplib: 0.13.69-py27h14c3975_0
http://localServer:8000/custom-packages
Proceed ([y]/n)?
So it appears the dependencies do solve out correctly (and the env works),
but notice a number of packages are retrieved from the defaults channel.
I've double checked to make sure I have exactly the same packages in our
local server, for example:
$ conda search zlib=1.2.11=ha838bed_2
Loading channels: done
# Name Version Build Channel
zlib 1.2.11 ha838bed_2 pkgs/main
zlib 1.2.11 ha838bed_2 anaconda-packages
And I have the .condarc set up as follows:
channel_priority: true
channels:
- http://localServer:8000/anaconda-packages
- http://localServer:8000/custom-packages
- defaults
So I'm thinking here conda should be seeing and installing my local
packages, and not the packages from defaults. The list of packages coming
from defaults are:
geos: 3.6.2-heeff764_2 defaults
gettext: 0.19.8.1-hd7bead4_3 defaults
hdf4: 4.2.13-h3ca952b_2 defaults
hdf5: 1.8.18-h6792536_1 defaults
icu: 58.2-h9c2bf20_1 defaults
jpeg: 9b-h024ee3a_2 defaults
kealib: 1.4.7-h5472223_5 defaults
libffi: 3.2.1-hd88cf55_4 defaults
libkml: 1.3.0-h9d32c78_3 defaults
lzo: 2.10-h49e0be7_2 defaults
pixman: 0.34.0-hceecf20_3 defaults
snappy: 1.1.7-hbae5bb6_3 defaults
swig: 3.0.12-h38cdd7d_3 defaults
zlib: 1.2.11-ha838bed_2 defaults
Here's the info on the installed conda:
$ conda info
active environment : None
shell level : 0
user config file : /fds/homes/me/.condarc
populated config files : /fds/miniconda3/.condarc
conda version : 4.5.11
conda-build version : 3.15.1
python version : 3.6.6.final.0
base environment : /fds/miniconda3 (writable)
channel URLs : http://localServer:8000/anaconda-packages/linux-64
http://localServer:8000/anaconda-packages/noarch
http://localServer:8000/custom-packages/linux-64
http://localServer:8000/custom-packages/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/linux-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/pro/linux-64
https://repo.anaconda.com/pkgs/pro/noarch
package cache : /fds/miniconda3/pkgs
/fds/homes/me/.conda/pkgs
envs directories : /fds/miniconda3/envs
/fds/homes/me/.conda/envs
platform : linux-64
user-agent : conda/4.5.11 requests/2.19.1 CPython/3.6.6
Linux/4.10.0-38-generic linuxmint/18.3 glibc/2.23
UID:GID : 1011:1004
netrc file : None
Unfortunately, I can't install the software on a fire-walled machine until
I can create the environment using the local server. Any help resolving
this issue would be most appreciated.
Thanks in advance,
Scott
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